Scientific Program

Tissue and organ homeostasis

RESEARCH GROUP

Functional genomics

Miguel Manzanares

We aim to understand how different aspects of genome function -namely DNA replication, chromatin 3D structure and gene transcription- are coordinated, and how they are established during the first stages of mouse development, starting from a naïve genome and leading to the first lineage decisions that occur in the embryo.

Research

The central research aim in our group is to understand how genome activity is regulated during early stages of mammalian development and how regulatory and genome structure variations can contributes to human disease. For this, we search for and identify distal acting cis-regulatory sequences, and study how they act on their target genes and how these are organized in the 3D structure of the chromatin and in gene regulatory networks underlying a specific biological state. Methodologically, we use a combination of bioinformatics and data analysis tools, structural genomics, genome-wide analysis, gene-editing using the CRISPR/Cas9 system, and functional tests using transgenic animal models and stem cells.

We are applying this approach to the study of four basic questions:

How are lineage decisions taken, starting from the fertilized egg, which result in the specification of the initial cell types of the embryo?
Which are the regulatory mechanism that drive the transition from pluripotency to lineage commitment along development?
What is the role of the genome structure in the definition of cellular status, and how does it relate to the regulation of gene expression?
What is the contribution of regulatory variation to common human diseases?

Group members

Miguel Manzanares Fourcade

Lab.: 407 Ext.: 4475
mmanzanares(at)cbm.csic.es

María Tiana Cerrolaza

Lab.: 407 Ext.: 4474
mtiana(at)cbm.csic.es

Aurora Arroyo Jiménez

Lab.: 407 Ext.: 4474
aurora.arroyo(at)cbm.csic.es

Andrea Maidana López

Lab.: 407 Ext.: 4474
amaidana(at)cbm.csic.es

Camila Quezada Gutiérrez

Lab.: 407 Ext.: 4474

Laura Manso Pérez

Lab.: 407 Ext.: 4474
lmanso(at)cbm.csic.es

Selected publications

Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF

Andreu MJ et al.

Chromatin dynamics through mouse preimplantation development revealed by single molecule localisation microscopy

Portela M et al.

Pluripotency factors regulate the onset of Hox cluster activation in the early embryo

Tiana M et al.

Transitions in cell potency during early mouse development are driven by Notch

Menchero S et al.

Latest publications

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